Soft Blood Vessels from a Dinosaur Fossil

Blood vessels taken from a dinosaur fossil.  (Image credit: M. Schweitzer, North Carolina State University.)
Blood vessels taken from a dinosaur fossil.
(Image credit: M. Schweitzer, North Carolina State University.)

In 2005, Dr. Mary Schweitzer shocked the paleontology community by reporting that she had found soft tissue in a Tyrannosaurus fossil that was thought to be 65 million years old.1 One type of soft tissue structure found appeared to be branching blood vessels like those shown in the picture above. The idea that blood vessels could have remained soft for millions of years is contrary to everything we currently know about biomolecules and their decay, so many in the paleontology community searched for some other explanation of Dr. Schweitzer’s find.

For example, its possible that despite its appearance, the structure isn’t composed of blood vessels at all. Instead, it could be the result of a recent colonization of bacteria or fungi. After all, when the blood vessels in a bone decay away, the “tunnels” in which they were housed remain. What if rather recently, a colony of bacteria took up residence in those same tunnels? These organisms often leave a slime (called a biofilm) behind, and if they left it in those “tunnels,” the biofilm would take the shape of the “tunnels.” That would make the biofilm look and behave a lot like blood vessels.

Such an explanation seemed to get some support back in 2008, when a major article was published in PLoS ONE.2 In that article, researchers reported on a survey they had done of many dinosaur bones. They found several examples of what appeared to be soft tissue in those bones, and they submitted some of those samples for carbon dating. The dating indicated that the samples were of very recent origin. In addition, they compared their samples to modern biofilms and modern collagen (a protein not made by bacteria). Their samples of apparent tissue resembled modern biofilms much more than modern collagen, so they concluded:

When biofilms coat a substrate, and that substrate is subsequently removed, the biofilm will retain much of the original morphology. This can explain the quantity and similarity of structures found in fossil bone and indicates that these structures are unlikely to be preserved dinosaurian tissues but the product of common bacterial activities.

Since then, however, the analysis of a variety of soft tissue found in dinosaur bones has lent a lot of support to the idea that these tissues are not biofilms, but are genuine dinosaur tissue (see here, here, here, and here). It seems that the definitive paper has finally been published, showing, at minimum, that soft blood vessels found in one dinosaur bone do come from the dinosaur itself.

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More Reasons To Doubt Iron as a Preservative for Dinosaur Tissue

This is reconstruction of a Tyrannosaurus rex skeleton.  (click for credit)
This is reconstruction of a Tyrannosaurus rex skeleton. (click for credit)

In 2005, Dr. Mary Schweitzer stunned the scientific community by finding what appeared to be soft tissue in a Tyrannosaurus rex fossil that is supposed to be 68 million years old.1 Since then, many such discoveries have been made (see here, here, here, here, and here), and a recent study indicates that soft tissue is probably quite common in dinosaur fossils. It is obviously hard to understand how soft tissue could remain in a fossil for millions of years, so those who are forced to believe that these fossils are millions of years old have tried to figure out some chemical mechanism that would prevent the decay of tissue for such an incredibly long time.

Two years ago, Dr. Schweitzer herself proposed such a mechanism.2 After studying the soft tissue from both the Tyrannosaurus rex and a Brachylophosaurus canadensis fossil, she and her team noticed that the structures which appeared to be blood vessels had iron particles imbedded in them. They proposed that iron and oxygen could work together to prevent soft tissue decay, and they even did a two-year experiment with ostrich blood vessels to support their hypothesis. I wrote about that paper after I read it, and in my analysis I listed three reasons I was skeptical of their proposed mechanism. Two chemists who know much more about this kind of chemistry than me have written a detailed paper in the latest issue of Creation Science Research Quarterly, and in my opinion, they make it clear that Schweitzer’s proposed mechanism simply isn’t consistent with the data she collected.3

Dr. John M. DeMassa has a Ph.D. in organic chemistry from the University of Massachusetts Amherst and a Masters of Divinity from Liberty University. His full-time job is designing antioxidants, but he is also a part-time preacher. He teamed up with Dr. Edward Boudreaux, who has a Ph.D. in theoretical chemistry from Tulane. He spent most of his career as a professor of chemistry at the University of New Orleans but has since retired. They teamed up to analyze the chemistry required for Schweitzer’s proposed mechanism to work. In the end, they conclude that the mechanism would have destroyed some of the chemicals that Schweitzer’s team found in their samples.

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Is Soft Tissue Common in Dinosaur Bones?

Structures that appear to be red blood cells (left) and collagen fibers (right) found in the claw of an unknown dinosaur. (Image from paper being discussed).
Structures that appear to be red blood cells (left) and collagen fibers (right) found in the claw of an unknown dinosaur. (Image from paper being discussed). For scale, the white bars are 1 micrometer (left) and 5 micrometers (right).

In early June, an extraordinary paper was published in the journal Nature Communications. The paper is free to read, so I encourage you to take a look at it. The authors of the paper begin by offering a summary of the various discoveries of soft tissue in dinosaur bones. They then make this important point:

Models proposed to account for such preservation indicate that it should be the exception rather than the rule. In particular, it has long been accepted that protein molecules decay in relatively short periods of time and cannot be preserved for longer than 4 million years. Therefore, even in cases where organic material is preserved, it is generally accepted that only parts of original proteins are preserved and that the full tertiary or quaternary structure has been lost.

If you aren’t familiar with the terms, “tertiary” and “quaternary” structure refer to details that determine the three-dimensional shape of a protein, which is very important for its chemical function. Essentially, the authors of the paper are saying that the individual chemicals (called amino acids) that make up the protein might still be around after 4 million years or so, but the protein will be highly degraded.

So, the authors say that according to the prevailing wisdom right now, soft tissue preservation in dinosaur bones (which are supposed to be much, much older than 4 million years) should be very rare. They decided to test this idea, and not surprisingly, they found that it was wrong. How did they test it? They looked at eight dinosaur fossils found in Cretaceous rock, which is supposed to be between 145 million and 65 million years old. The authors suggest that the fossils are 75 million years old. The important point, however, is that these bones were definitely not well-preserved. As one of the authors said in a news report:

They’re very scrappy, individual broken bones. I can’t even tell you what dinosaur they come from.

What they found in these “scrappy” bones is surprising, at least if you think they are 75 million years old.

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Intact Proteins Found in Fossils That Are Supposedly 8-18 Million Years Old

This is a picture of an Ecphora fossil.  (click for credit)
This is a picture of an Ecphora fossil. (click for credit)

Since 2005, there have been several discoveries of soft tissue in fossils that are supposedly millions of years old (see here, here, here, here, here, and here). From a young-earth perspective, this is interesting, because it is hard to understand how soft tissue could be preserved for millions and millions of years. Dr. Mary Schweitzer has attempted to provide a mechanism for such preservation, but it isn’t applicable in the real world. If nothing else, I can safely say that finding such tissue was surprising to those who believe the fossils are millions of years old, but it wasn’t surprising to those of us who think the fossils are only thousands of years old.

Recently, I ran across a very interesting study that adds to the list of surprises for those who think that some fossils are millions of years old. The authors were analyzing the fossilized shells of an extinct group of marine mollusks from the genus Ecphora. Unlike many mollusk groups, the fossilized shells of the Ecphora are colored reddish-brown. The authors decided to find out what produces this colorization, so they soaked the fossils in weak acid to remove the minerals. What remained were thin sheets of organic residue that had all the characteristics one would expect if they were made of proteins.

When the authors examined the sheets chemically, they found all the hallmarks of proteins. For example, they put the sheets through hydrolysis, a process that living organisms use to break proteins down into their component chemicals, which are amino acids. When the sheets were hydrolyzed, they broke down into amino acids, exactly as you would expect a sheet of proteins to do. They also measured the percent carbon in the sheets as well as the ratio of carbon to nitrogen. In the end, they concluded:1

…the organic matter elemental and isotopic compositions are very similar to those from modern marine invertebrates. We conclude, therefore, that essentially intact shell-binding proteins have been preserved for up to 18 Ma.

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Maybe the Sun Doesn’t Affect Radioactive Decay Rates

variable_decay

NOTE: Even more data have been published indicating that the sun does not affect radioactive decay rates.

In previous articles (see here, here, and here), I discussed some very interesting results that were coming from different labs. These results indicated that the half-lives of some radioactive isotopes vary with the seasons. They seemed to imply that the sun was somehow affecting the rate of radioactive decay here on earth. This made the results controversial, because there is nothing in known physics that could cause such an effect.

One criticism of the studies was that weather could be the real issue. Even though labs are climate-controlled, no such control is perfect. Humidity, pressure, and (to a lesser extent) temperature can all vary in a nuclear physics lab, so perhaps the variations seen were the result of how the changing weather was affecting the detectors. However, the authors used several techniques to take changing weather into account, and all those techniques indicated that it couldn’t explain the variations they saw. The authors were (and probably still are) convinced that they were seeing something real. I was as well. In fact, one of my posts was entitled, “There Seems To Be No Question About It: The Sun Affects Some Radioactive Half-Lives.”

Well, it looks like there is some question about it. Two scientists from Germany decided to measure the rate of radioactive decay of the same isotope (Chlorine-36) that was used in some of the previously-mentioned studies. However, they decided to use a different experimental technique. The studies that showed variation in the rate of radioactive decay used a Geiger-Muller detector (often called a “Geiger counter”) to measure the radioactive decay. The two scientists who authored this study used a superior system, based on liquid scintillation detectors. The authors contend (and I agree) that the response of such detectors is much easier to control than the response of Geiger-Muller detectors, so their results are more reliable. They also used a particular technique, called triple-to-double coincidence ratio, that reduces “noise” caused by background radiation. When doing detailed measurements of radioactive decay, this is one of the standard techniques employed.

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UndeNYEably Uninformed

This is the cover of Nye's error-filled book.
The cover of Nye’s error-filled book.
Bill Nye calls himself “The Science Guy,” but he sometimes acts in ways that can only be described as anti-science. For example, in a video he stated that creationism shouldn’t be taught to children. This, of course, is blatantly anti-science, because scientific progress is built on the competition of ideas. If you say that an idea shouldn’t be considered because you don’t like it, you are working against science, not for it. In addition, he narrated a video about global warming that contained a faked experiment! Faking experiments is definitely not pro-science! Nevertheless, Nye obviously loves science, which leads me to wonder why he sometimes acts against it.

After reading Nye’s book, Undeniable: Evolution and the Science of Creation, I think I understand. He simply doesn’t inform himself on scientific issues. As a result, he really doesn’t understand science and doesn’t understand why some of his actions are so anti-science. Consider, for example, what he writes about kids who are taught creationism:

Not only that, these kids will never feel the joy of discovery that science brings. (p.10)

This, of course, is demonstrably false. Had Nye bothered to inform himself about kids who are taught creationism, he would find that they often do better in science than their peers who were not taught creationism. In addition, he would have learned that many kids who were taught creationism are now studying science at the university level or are already professional scientists. I have several students, for example, who say that the reason they decided to become scientists was because of my creationist textbooks (see here and here, for example)!

Of course, the fact that Nye is utterly uninformed about creationism leads to all sorts of problems with his book, which I have detailed in the PDF document at the end of this review. What really surprised me, however, is that his book shows that he hasn’t really informed himself about the science related to evolution, either. As a result, much of what he says in the book is utterly false.

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An Update On The Triceratops Fossil That Contained Soft Tissue

A triceratops skull (click for credit)
A triceratops skull (click for credit)
In March of 2013, I wrote about soft tissue that had been found in the fossilized remains of a Triceratops horridus, which is supposed to be about 65 million years old. One of the scientists who found the tissue and published a paper on it in the peer-reviewed literature1 (Mark Armitage) was subsequently fired from his position at California State University Northridge. He has sued the university, claiming that he was fired because of his religious views. This update isn’t about the lawsuit; I have no knowledge of how that is going. Instead, this update is about the fossil itself.

Samples from the fossil were sent to Dr. Alexander Cherkinsky at the University of Georgia’s Center for Applied Isotope Studies for dating via the carbon-14 dating method. Since the current half-life of carbon-14 is “only” about 5,700 years, there should be no detectable levels of it in the original parts of the fossil, if the fossil is millions of years old. However, Dr. Cherkinsky’s lab found very detectable levels of carbon-14. In fact, there was so much carbon-14 in the fossil that it was given a date of 41,010 ± 220 years.2 This is well within the accepted range of carbon-14 dating, and it is actually younger than other carbon-14 dates reported in the scientific literature.3

While this is an interesting result, it is not as interesting as I would like it to be. I wanted the soft tissue that was found in the fossil to be dated, but it was not. Instead, the fossil’s bioapatite (a mineral found in bone) was dated. According to a 2009 report in the journal Radiocarbon, bioapatite is actually preferable to soft tissue in many cases. As the report states:4

Contamination of the organic fraction in the process of the burial or during museum preservation treatment generally prohibits the use of the collagen fraction for dating. Our investigation has shown that the pretreatment of bone with diluted acetic acid following a proscribed technique allows the separation of the bioapatite fraction from diagenetic carbonates.

Please note that “diagenetic carbonates” refer to contaminants that occur during the fossilization process. The report then gives a method by which original bioapatite can be extracted from a fossil. Dr. Cherkinsky’s lab followed that procedure. Since the lab specifically reported a date for the fossil’s bioapatite, I have to assume that the investigators who actually did the preparation and dating think they were dating the fossil’s original bioapatite, not a mixture of bone and contaminants.

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An Excellent Question from a University Student

nuclear_Chem

In case you haven’t read two of my previous posts (here and here), I am doing something I haven’t done for nearly 20 years – teaching a university-level chemistry course. The class has been going on since the last week of August, but starting this past Friday, the topic has been nuclear chemistry, which is the speciality in which I got my Ph.D. Obviously, then, it is near and dear to my heart. We are probably spending too much time on the subject, but I just can’t help it. We will be getting back to “normal” chemistry (which concentrates on electrons) soon enough. For now, I want the students to see the wonders of the nucleus!

Of course, the most reasonable subject with which to begin a discussion of nuclear chemistry is radiation. So I taught the students about the various modes of radioactive decay, why radioactive decay happens, etc. Then I tried to make the point that radiation is everywhere, and that’s okay, since our bodies are designed to deal with low doses of it. I then showed them a Geiger counter and a radioactive source. The source was labeled with the warning symbols you see above. Not surprisingly, when I put the source up to the Geiger counter, the students heard lots of clicking, because the source was emitting gamma rays.

Then I surprised them a bit. I put an old orange ceramic plate up to the Geiger counter, and it started clicking a lot more than it did with the source I had just used. That’s because the pretty orange color was made using uranium oxide, which is radioactive. It emits alpha particles, beta particles, and gamma rays. People ate off those plates for many years before it was determined that they shouldn’t be made anymore. I did the same thing with an old wristwatch. Once again, the Geiger counter went nuts, because the watch’s hands and numbers had been painted with a mixture of radium and zinc sulfide to make them glow. The radium also emits alpha particles, beta particles, and gamma rays. I then assured them that modern luminous paints aren’t radioactive.

The reason I am writing this blog entry, however, is because of a question one student asked me.

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The 2014 Valley Home Educators Convention

This is me at my publisher's booth talking with two homeschoolers.
This is me at my publisher’s booth talking with two homeschoolers.

This past weekend, I spoke at the Valley Home Educators Convention in Modesto, California. It’s a mid-sized convention that is always well-run and a delight to attend. I gave a total of six talks: Why I believe in a Young Earth, Creation vs Evolution: Religion vs Science or Religion vs Religion, Homeschooling: The Solution to Our Education Problem, Why Homeschool through High School, What about K-6 Science?, and ‘Teaching’ the Jr High & High School Sciences at Home. They were all well attended, and I got several good questions. However, I did have one talk (I forget which one) after which no one asked a single question. I don’t recall that ever happening before.

I was a bit concerned about giving the first talk, because it tends to ruffle some feathers. In the talk, I make the (rather obvious to me) point that the young-earth interpretation of Scripture is not the only orthodox interpretation that submits to Scriptural authority. I demonstrate this several different ways, including by pointing out that some of the early church fathers (like Origen) interpreted the days in the creation account to be figurative and not literal. By the 1100’s a figurative interpretation of Genesis was widespread in the church. Other church fathers (like Clement of Alexandria, Athanasius of Alexandria, Augustine, and Hilary of Poitiers) believed that the days had nothing to do with the passage of time but instead were used as a means by which the things that were created could be ordered in terms of priority.

This, of course, goes against what some of my fellow young-earth creationists teach, so sometimes, the content of the talk is greeted with quite a bit of anger. At this convention, however, no one seemed to get angry. In fact, I didn’t get a single hostile question after the talk, which surprised me. Everyone who spoke to me about that talk later said they appreciated how I handled such a hot-button issue. I did get an interesting question related to the talk from someone who came to my publisher’s booth, and it’s the question I want to address in this post.

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An Update on Mark Armitage and the Inquisition

Mark Armitage giving a talk at a meeting of the Creation Science Fellowship.  (click for source)
Mark Armitage giving a talk at a meeting of the Creation Science Fellowship. (click for source)
Last year, I discussed how Mark Armitage fell victim to the evolutionary Inquisiton. In July of last year, he published a paper in the peer-reviewed journal Acta Histochemica. In that paper, he reported finding soft tissue in a Triceratops fossil that is supposedly 65 million years old. Remarkably, the soft tissue was composed of tiny, fragile cellular structures which showed no evidence of being mineralized. In addition, there was no doubt that this tissue came from the Triceratops, as it has exactly the microscopic structure one would expect for bone tissue.

That was too much for the High Priests of Science. The Inquisition struck, and Armitage was fired from his position at California State University. Armitage himself commented on the post, indicating he was convinced that his firing was directly related to the paper and he would sue the university.

Today, I ran across an announcement from The Pacific Justice Institute indicating that he has filed the lawsuit. The announcement includes something Armitage mentioned in his comment – that a university official proclaimed:

We are not going to tolerate your religion in this department!

A staff attorney for the Pacific Justice Institute is quoted as saying:

It has become apparent that ‘diversity’ and ‘intellectual curiosity,’ so often touted as hallmarks of a university education, do not apply to those with a religious point of view.

That isn’t news to me. It isn’t news to a lot of other Christians who happen to be scientists, either. It will be interesting to see how this lawsuit progresses.