Dam That’s Big!

Beavers are amazing animals. They can actually alter their surroundings in a purposeful way in order to make them more suitable. They do this by building dams so that water collects to form an amazing wetland environment. Here is an example:

A Beaver Dam
Image from http://en.wikipedia.org/wiki/File:Beaver_dam_in_Tierra_del_Fuego.jpg

Some people think that beavers live in their dams, but that is not correct. The dam is there simply to produce the wetland environment the beavers love. Of course, lots of other animals love a wetland environment, so beavers are considered a keystone species, an animal upon which other animals heavily depend.

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One reason a Young-Earth-Creationist Education Is Superior To Other Kinds of Science Education

Image licensed from www.clipart.com
In several other posts (here, here, here, here, here, and here) I have discussed the spectacular scientific success of students who were fortunate enough to have a young-earth-creationist science education in high school. Simply put, those who learn science from a young-earth-creationist perspective are way ahead of their peers when it comes to university-level science. There are many reasons for this, and a recent article in the journal Science discusses what is probably the most important one: A young-earth creationist science education teaches students how to analyze scientific claims critically. Unfortunately, most evolutionary-based science programs simply do not.

As the article says:

Critique is not, therefore, some peripheral feature of science, but rather it is core to its practice, and without argument and evaluation, the construction of reliable knowledge would be impossible…Science education, in contrast, is notable for the absence of argument 1

The author of the article (Jonathan Osborne) marshals several lines of evidence to indicate that in order to achieve success in science education, teachers and textbooks must emphasize the argumentation involved in science. I couldn’t agree more.

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More “Junk” That is Really Gold!

I expect nearly every creationist and Intelligent Design blog will eventually discuss this, but I thought I would throw in my “two cents” about a study that has serious implications for the creation/evolution controversy. Laura Poliseno and her colleagues have published a study in Nature that has demonstrated a function for a class of pseudogenes.1 The study will result in a radical change in biology’s understanding of what has been disparagingly called “junk DNA.”

Let’s start from the beginning. A pseudogene is a section of DNA that looks a lot like a gene that exists in another section of an organism’s genome. However, despite this similarity, the pseudogene does not produce a protein. In other words, suppose a researcher finds a gene that produces a given protein. Let’s call it “gene A.” If the researcher finds another part of the organism’s genome that looks incredibly similar to “gene A” but with a few modifications that make it impossible for the organism to turn it into a protein, that part of the organism’s genome is called a pseudogene.

Since pseudogenes cannot be turned into proteins, it has long been thought that they are the result of a gene being duplicated at some point in history and then being mutated to the point where the gene cannot be used anymore. Indeed, as a commentary in the same issue of Nature says:

Pseudogenes are considered to be defunct relatives of known genes. 2

What Poliseno and her colleagues have conclusively demonstrated is that at least some pseudogenes are anything but defunct, and they might not even be relatives of known genes.

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This Isn’t Evolution – It’s Lunacy

Are some monkeys more valuable than some babies?
Clipart licensed from www.clipart.com
As you can see by the links on the right, I am a fan of the Discovery Institute. As its website says, “The Institute discovers and promotes ideas in the common sense tradition of representative government, the free market and individual liberty.” Those are three concepts that are very near and dear to my heart. As a result, I get their Discovery Institute Views, and I read with interest the Summer 2010 edition.

On the front page of that newsletter, there was an article about Wesley J.
Smith,
senior fellow at the Institute’s Center for Human Rights and Bioethics. He is a champion of human exceptionalism, the seemingly obvious concept that people are more valuable than other forms of life on this planet. At first, it seemed a bit odd to me that this concept needs a champion, since it is, as one of my chemistry professors used to say, “intuitively obvious to the most casual observer.” As I learned from the article, however, there are people who actually attempt to argue against this self-evident idea.

One such person is Peter Singer, professor of Bioethics at Princeton University and laureate professor at the Center for Applied Philosophy and Public Ethics at the University of Melbourne. In 1979, he published a textbook called Practical Ethics. In 1993, a second edition was published, and that’s the one I found at the library. After skimming parts of the book and reading other parts, I can definitely say that this is one guy who has taken the hypothesis of evolution and twisted it into lunacy.

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Bioluminescence

Bioluminescent single-celled organisms make this wave glow.
Image from http://en.wikipedia.org/wiki/File:Bioluminescent_dinoflagellates.jpg

Bioluminescence is an amazing thing. Many living creatures use it to “light up” so they can communicate with others, more easily find food, or defend themselves against predators. In the picture above, for example, there are millions of single-celled organisms (called “dinoflagellates”) in the water. When they are disturbed, they use bioluminescence to glow. They are glowing in the picture because the wave is disturbing them. This is actually a defense mechanism. If the water is disturbed by an animal that eats them (such as a manta ray), the dinoflagellates glow, and the light might attract a predator that will eat (or scare away) the manta ray.

E. A. Widder wrote a review1 of bioluminescence in the May 7th issue of the Journal Science, and it is fascinating. As Widder points out, there are over 700 genera (the classification level above species) of organisms that use bioluminescence, and most of them (about 80%) live in the ocean. The mechanisms by which this process works are elegant and amazing, and they certainly defy any coherent evolutionary explanation.

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Introns: Junk that Is Really Gold

Before the human genome was sequenced, it was thought that humans had well over 100,000 genes. This reasonable conclusion was based on the fact that that the human body is estimated to produce 120,000 – 140,000 different proteins. Since biology had determined that a gene tells a cell how to make a protein, it was assumed that 120,000 – 140,000 proteins would require 120,000 – 140,000 different genes.

As is often the case with science, however, the data turned out to be very surprising. When the human genome was initially sequenced, it was estimated to contain about 30,000 genes. Today, it is thought that the human genome contains 20,000–25,000 genes.1

So if a human cell requires a gene in order to make a protein, and if the human body produces as many as 140,000 different proteins, how can it do so with “only” 20,000–25,000 genes? A large part of the answer to that question has to do with an amazing process called alternative splicing.

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I Get E-MAIL

As I have mentioned previously, I get lots of E-MAIL (and a few letters) from students who have used my courses and are now at university. They generally report that they are significantly better prepared for university-level science than their peers, and they often say that my courses are what inspired them to continue to study the sciences at the university level. This is not surprising, as a young-earth-creationist education is not only the best science education you can have, but it also tends to inspire a true love for science.

I got another one of those wonderful E-MAILs yesterday, and I want to post some excerpts from it because they illustrate an important point about the nature of home education.

I am a freshman at Ohio University Eastern (OUE). I was home-schooled kindergarten through 12th grade, and in high school I used [your] Physical Science, Biology, Chemistry, and Physics…My mom has no formal training in the sciences; so I relied solely on the books and help line to instruct me…Tonight at the campus’s commencement ceremony, I was awarded the “Outstanding Chemistry Student of the Year” award. One student receives this award if the chemistry professor, Dr. Zachariah, thinks that there is an eligible student. Last year, Dr. Zachariah did not give out the award. (emphasis mine)

First, let me congratulate this student publicly. It is one thing to win an award that is given out every year, but that simply means you are the best student that year. While it is an accomplishment, it might not mean much, depending on the other students taking chemistry that year. To win an award that is given out only if the professor thinks someone deserves it shows that you are truly an outstanding student. Well done!

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Entropy and Evolution, Part 2

In my previous post, I discussed the proper way to apply the Second Law of Thermodynamics to a simple process: the freezing of water in a bucket. Now I want to apply the Second Law of Thermodynamics to the process of evolution. This is a difficult thing to do, because currently, there is no accepted mechanism for the process of evolution. Evolution might occur according to the Neo-Darwinian Synthesis; it might occur via punctuated equilibrium; it might occur according to the evo-devo view; it might occur as a result of facilitated variation; it might occur by some as yet undiscovered mechanism; or it might occur as a result of a combination of all or some of these mechanisms.

Even though there is no agreed-upon mechanism for evolution, some general statements can be made about the supposed process, and that should be enough to allow us to roughly apply the Second Law of Thermodynamics to it. In general, evolution says that organisms increase in complexity over time. A single-celled organism, for example, eventually developed the ability (through some as yet unknown process) to cooperate with other cells, which eventually led to a multicelled organism. Clearly, a multicelled organism is more complex than a single-celled organism, so via that unknown process, “simpler” single-celled organisms gave rise to “more complex” multicelled organisms. These multicelled organisms began to develop (once again, through some as yet unknown process) more “advanced” features, so that eventually a large diversity of life formed.

The longer evolution had to work through its unknown process, the more complex living creatures became. Thus, while it took some time for the evolutionary process to create relatively “simple” multicelled creatures, it took more time for evolution to produce complex invertebrates, and it took more time for evolution to produce vertebrates. The more “advanced” the vertebrate, the longer it took for evolution to produce it.

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Entropy and Evolution, Part 1

I was reading Dr. Hunter’s blog yesterday, and he had a post about entropy and evolution. In that post, he cited an article that comes to the right conclusion on the issue, but for the wrong reason. In fact, I am surprised that it passed peer review, since it promotes a very bad misconception regarding the Second Law of Thermodynamics. Because both creationists and evolutionists do a very poor job of applying the Second Law of Thermodynamics to the concept of origins, I thought I would try to explain the proper way to interpret the Second Law of Thermodynamics. In the next post, I will then apply the Second Law to the concept of evolution.

Before I get started, however, let me tell you the overall conclusion. The Second Law of Thermodynamics DOES NOT forbid the process of evolution. I know there are many creationists out there who claim that it does, but they are simply wrong. In addition, I know there are a lot of evolutionists out there who claim that it doesn’t, but they do so for reasons that are often wrong. So let’s talk about the Second law of Thermodynamics and how to properly apply it to many situations, including the process of evolution.

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Coyne and Embryonic Development…Wrong AGAIN!

A student recently sent me a question based on a statement made in Dr. Jerry Coyne’s book, Why Evolution is True. Since there doesn’t seem to be much written about it for a general audience, I thought I would summarize the issue. Here is Dr. Coyne’s statement:

One of my favorite cases of embryological evidence for evolution is the furry human fetus. We are famously known as “naked apes” because, unlike other primates, we don’t have a thick coat of hair. But in fact for one brief period we do – as embryos. Around sixth months after conception, we become completely covered with a fine, downy coat of hair called lanugo. Lanugo is usually shed about a month before birth, when it’s replaced by the more sparsely distributed hair with which we’re born. (Premature infants, however, are sometimes born with lanugo, which soon falls off.) Now, there’s NO NEED for a human embryo to have a transitory coat of hair. After all, it’s a cozy 98.6 degrees Fahrenheit in the womb. Lanugo can be explained ONLY as a remnant of our primate ancestry: fetal monkeys also develop a coat of hair at about the same stage of development. Their hair, however, doesn’t fall out, but hangs on to become the adult coat. And, like humans, fetal whales also have lanugo, a remnant of when their ancestors lived on land.1 (emphasis mine)

Note the strong words by Dr. Coyne. Embryos have “no need” for such hair, and thus its presence can “only” be explained as a remnant of our primate ancestry. Not surprisingly, Dr. Coyne is wrong on both counts.

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