Intelligent Design Archives : Page 9 of 17 : Proslogion

Another Example of Three-Way Mutualism. Is This Just the Tip of the Iceberg?

Over two years ago, I wrote about an interesting three-way mutualistic relationship between a virus, a fungus, and a plant. Less than a year later, I wrote about how people are actually walking ecosystems, participating in a huge number of mutualistic relationships with many different species of bacteria. Last night, while reading the scientific literature, I ran across another example of a three-way mutualistic relationship, and it is equally as fascinating!

This three-way relationship starts with seagrasses. Coral reefs are the “stars” of the marine world, but seagrass communities can be considered its “workhorses.” While they make up only 0.2% of the ocean’s ecosystems, they produce more biomass than the entire Amazonian rainforest!¹ Why are they so productive? Because they form a wide variety of marine ecosystems that serve as nurseries for many developing fishes and homes to a wide variety of sea creatures including turtles, manatees, shrimp, clams, sea stars, etc. Because of their amazing ability to support such ecosystems, seagrasses have been studied by marine biologists for some time. However, there has always been a nagging mystery associated with them.

The roots of seagrasses trap sediments which form a rich mud that is often several feet deep. The mud is rich because it contains all manner of decaying organic matter. However, the reason the organic matter decays is because bacteria decompose it. One of the byproducts of this bacterial decomposition is sulfide, and if that sulfide were allowed to build up to high concentrations, it would actually end up harming the seagrasses themselves. However, it never does. No one has proposed a satisfactory explanation as to why this doesn’t happen.

Certainly, the seagrasses transport oxygen to the mud through their roots, and that oxygen can turn the sulfide into sulfate, which is harmless to the seagrasses. However, detailed studies show that the sulfide produced by the resident bacteria accumulates far faster than it can be removed by the oxygen that is added to the mud through the seagrasses’ roots, especially during warm seasons.² Thus, there must be some other way that sulfide is being removed from the mud.

Marine biologists had no idea what this other way was…until now.

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Human Body Hair is Useless, Right? WRONG!

leghair — Many evolutionists think that body hair in humans is useless. The data say otherwise. (Click for credit)

One of the many reasons scientists are rejecting the hypothesis of evolution (see here and here, for example) is that many of its predictions have been falsified (see here, here, here, and here for even more examples). The more we learn about the world around us, the more clear it is that the predictions of the evolutionary hypothesis just don’t work. This is probably most apparent when it comes to “vestigial organs,” biological structures that are supposed to serve no real purpose; they are simply leftover vestiges of the evolutionary process. As Darwin himself said, they are like the silent letters of a word. They don’t serve a purpose in the word, but they do tell us about the word’s origin.

I have written about vestigial structures many times before (here, here, here, here, here, here, and here) because they are so popular among evolutionists. However, as the data clearly show, the evolutionists are simply wrong about them, and the more research that is done, the more clear it becomes. The latest example is human body hair. This has always been a favorite among evolutionists. Here are two evolutionary descriptions of human body hair. The first comes from a book specifically designed to help the struggling evolutionist in his attempt to convince people that his hypothesis has scientific merit.¹

Humans, like all other organisms, are living museums, full of useless parts that are remnants of and lessons about our evolutionary histories (Chapter 6). Humans have more than 100 non-molecular vestigial structures. For example, our body hair has no known function.

The second comes from a textbook ²

Body hair is another functionless human trait. It seems to be an evolutionary relic of the fur that kept our distant ancestors warm (and that still warms our closest evolutionary relatives, the great apes).

As is the case with most evolutionary ideas, serious scientific research has shown that such statements are simply wrong.

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One Way To Think About the Complexity of the “Simplest” Life Form

A cluster of 14 computers. The simulation discussed in this article used a cluster of 128 computers. (Click for credit)

I have always been fascinated by the question, “How simple can life get?” After all, anything that is alive has to perform certain functions such as reacting to external stimuli, taking in energy and converting that energy to its own use, reproducing, etc. Exactly how simple can a living system be if it has to perform such tasks? Many biologists have investigated this question, but there isn’t a firm answer. Typically, biologists talk about how simple a genome can be. The simplest genome belongs to a bacterium known as Carsonella ruddii. It has 159,662 base pairs in its genome, which is thought to contain 182 genes.¹ However, it is not considered a real living organism, as it cannot perform all the functions of life without the help of cells found in jumping plant lice.

The bacterium Pelagibacter ubique has the smallest genome of any truly free-living organism. It weighs in at 1,308,759 base pairs and 1,354 genes.² However, there is something in between these two bacteria that might qualify as a real living organism. It is the bacterium Mycoplasma genitalium. It’s genome has 582,970 base pairs and 525 genes.³ While it is a parasite, it performs all the functions of life on its own. It just uses other organisms (people as well as primate animals) for food and housing. Thus, while it cannot exist without other organisms, it might be the best indicator of how “simple” life can get.

If you follow science news at all, you might recognize the name. Two years ago, Dr Craig Venter and his team constructed their own version of that bacterium with the help of living versions of the bacterium, yeast cells, and bacteria of another species from the same genus. Well, now a scientist from Venter’s lab teamed up with several scientists from Stanford University to produce a computer simulation of the bacterium!

Their work, which seems truly marvelous, gives us deep insight into how complex the “simplest” living organism really is.

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A Real-Life Example of “Convergent Evolution”

Several times in the past (here, here, here, here, and here), I have written about convergent evolution and the problems it poses for anyone who wants to believe that all the amazing organisms we see today are the result of a mindless evolutionary process. As a quick review, remember that in general, evolutionists claim that similarities are the result of common ancestry. All vertebrate limbs look very similar, for example, because all vertebrates evolved from a common ancestor. While evolution “tweaked” the design of each animal’s limb so that it could be properly adapted to its environment, the basic structure of the vertebrate limb is the same in all vertebrates because they all inherited that basic structure from a common ancestor.

Of course, as is usually the case for evolution, more and more data have been collected that are inconsistent with this idea. Dolphins and bats, for example, both use sonar to navigate and to seek out prey. However, there is no hypothetical sonar-using common ancestor that links them. Thus, while they are very similar in this regard, evolutionists have to say that this particular similarity is not due to common ancestry. Instead, it is the result of “convergent evolution.” Both animals evolved the ability to use sonar independently, along different evolutionary lines. In other words, evolution “converged” on the same system in two different, unrelated cases.

Now please understand that this similarity is very deep. Indeed, the genes that allow this process to happen are nearly identical in these two animals.^1-2 So in order to understand the use of sonar in dolphins and bats, evolutionists have to believe that evolution just happened to come up with the same system (all the way down to the genes) for navigation and predation in two completely different lineages.

If this were the only case in which unrelated organisms have amazingly similar systems, it might be reasonable to chalk it up to evolution just being “lucky” enough to come up with the same system twice. However, as evolutionist Dr. Simon Conway Morris tells us, nature abounds with examples of this. Indeed, most evolutionists believe that eyes must have evolved independently in unrelated lineages as many as 60 times in order to be consistent with the data at hand!³

If all of that seems far fetched to you, don’t worry. You are not alone. Most reasonable people can see when an attempt to explain around inconvenient data becomes desperate.

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Another “Fact” I Was Taught Bites the Dust

One of the fascinating things about science is that its conclusions are constantly changing. Because of new experimental techniques and closer investigation, many “scientific facts” that I was taught at university are now known to be false. This makes science interesting, to say the least! As someone who has published original research that has drawn conclusions regarding the nature of the atomic nucleus, I often wonder how long it will take for some of those conclusions to be demonstrated false!

In a previous post, I discussed Bateman’s Principle, which some evolutionists considered to be a scientific law. However, we now know that not only is Bateman’s Principle not true in many, many species, it was also based on faulty experiments. In the course of the discussion that followed, a commenter mentioned another scientific “law” that is probably wrong – the idea that a woman is born with all the egg cells she will ever have. I decided to look into this topic, and I was amazed at what I had missed in the course of my normal scientific reading. Thank you, Shevrae, for alerting me to the new advances in this area.

In case you didn’t have a detailed course on human anatomy and physiology, you might not know that it has been considered a scientific fact since the 1950s that when a woman is born, she has all the egg cells she will ever have. This “fact” is based on some really good research. During the fourth month of development in the womb, it has been shown that female babies start producing oogonia, which are cells that start to develop into egg cells. However, they are stopped early in their development and are surrounded by a protective layer of cells. This structure (the cell that is “frozen” in development and its protective case) is called a primordial follicle.

When a woman is born, she has hundreds of thousands (sometimes millions) of primordial follicles in each ovary, but some degenerate during childhood. When she reaches puberty, she generally has about 400,000 primordial follicles in her ovaries. After puberty, hormone cycles regularly cause some of the primoridal follicles to continue development. The nature of the protective cell layer changes, and the cell inside the protective layer continues its development into an egg cell. Interestingly enough, however, the process will not fully complete unless the developing egg cell is fertilized by a sperm. If no fertilization takes place, the cell that has been developing dies without ever forming a true egg cell.

All of the above statements are (as far as we can tell) true. Based on these facts, it has been taught for more than 60 years that since a woman starts out with hundreds of thousands of primordial follicles when she is born, she never makes any new ones. Thus, a woman is born with all the potential egg cells she will ever have. New research indicates that this conclusion is false.

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Upset Atheists

As I have been surfing the blogosphere over the past few days, I have seen three stories that relate to atheists being upset. I’ll start with the first one, which is both ironic and hilarious at the same time. It seems that the Smithsonian Institute has produced a flyer (shown on the left) promoting its IMAX theater. To entice the reader, there is a prominent picture of a dinosaur on the front cover. I am sure the marketing department chose the picture because it is so realistic. Here’s the problem for the Smithsonian: the picture is of a model from the Creation Museum, which promotes young-earth creationism! I find this particularly funny, since the Smithsonian has attacked the museum on its blogs.

For example, Sarah Zielinski wrote a post discussing how a group of creationist students from Liberty University visits the Smithsonian’s National Museum of Natural History every year. She then mentions the “other side,” where a secular group of students from Indiana University visited the Creation Museum. She posts a video that the students made, and not surprisingly, rather than trying to address the evidence set forth in the museum, the students simply try to mock it. After the visit, the students stop at a restaurant about 10 miles away, and one of them says:

If there is a nexus of all the misinformation and propaganda against science and progressive education it is about 10 miles…education in general…it’s about 10 miles down the road.

Well, when the Smithsonian’s marketing department wanted to depict a dinosaur, it chose one from this nexus of misinformation. Not surprisingly, this hasn’t gone over well with some in the atheist community. For example, “The Friendly Atheist” mentions the founder of the museum, Ken Ham, saying:

*Sigh*

You win this round, Ham…

Smithsonian people, I know it’s just a picture of a random dinosaur and you would never endorse Creationism garbage, but you’re getting the image from people who wrongly believe dinosaurs lived with people.

To me, it’s not surprising that the Smithsonian unwittingly used a picture from the Creation Museum. While there are things in the Creation Museum with which I strongly disagree, overall, I found it to be significantly more scientifically accurate than most museums, including the Smithsonian’s National Museum of Natural History. Thus, it’s not surprising to me that they found one of the Creation Museum’s dinosaur models to be an accurate depiction of a dinosaur.

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Information Is A Real, Physical Quantity

bookburn — Getting rid of information requires a release of energy.

When you read these words, you are receiving information. Some would call the information “too sciency, too nerdy,” but it is information nonetheless. But what, exactly, is information? Is it a real, physical quantity, or is it some esoteric construct of the mind? Rolf William Landauer spent a lot of time thinking about this question. That’s not surprising, because he was a physicist who worked for IBM, a company that deals with lots of information. In 1961, he wrote a paper for the IBM Journal of Research and Development in which he argued that information is a real, physical quantity that is governed by the Second Law of Thermodynamics. As a result, in order to erase information (such as when a file is deleted from a hard drive), a certain amount of energy must be released.¹

It is important to understand what Landauer meant. He didn’t mean that it takes energy to erase information. For example, if you want to erase the writing on a whiteboard, you have to expend energy wiping the markings off the board. That makes perfect sense, but it’s not what Landauer was referring to. He said that in order for information to be erased, energy must be released into the environment. The very act information being destroyed, regardless of the method, requires a physical response: a minimum amount of energy must be released. This is because information is a real, physical quantity and is therefore governed by the Second Law of Thermodynamics.

Now the Second Law of Thermodynamics is misunderstood and misused frequently (you can read more about that here and here), so let’s start with what the Second Law actually says. It says that the entropy of the universe must always increase or at least stay the same. It can never decrease. What is entropy? It is a measure of the energy in a system that is not available to do work. However, a more useful definition is that it is a measure of the disorder in a system. The larger a system’s entropy, the “messier” it is. Using this concept of entropy, then, we can say that the disorder of the universe is always increasing or at least staying the same: the universe never gets more ordered.

Now let’s apply this concept to a computer disk. A computer disk has a bunch of bits, and each bit can have a value of either 0 or 1. On a blank disk, all the bits have the same value. Let’s say it’s 0. However, as you start putting information on the disk, the bits change. Some stay at their original value (0), but others change (they become equal to 1). So as more information gets put on the disk, there are more possibilities for the values of the bits. If you were to erase the disk again, you would set all those bits back to 0. When you do that, the disk gets more ordered. While there was information on the disk, it was possible for many of the bits to have a value of 1. When you erase the disk, that’s not possible anymore – all the bits have to have a value of 0. From the point of view of the disk, then, when you erase the information, the disk gets more ordered.

If the disk gets more ordered when information is erased and nothing else happens, the universe would become a bit more ordered, but the Second Law of Thermodynamics forbids this. Thus, in order to follow the Second Law, the very act of erasing information must release energy. Furthermore, that energy must be large enough to disorder the universe as much as or more than the disk became ordered. That way, the decrease in entropy of the system (the disk) will be offset by the increase in entropy of the disk’s surroundings so that the total entropy of the universe remains the same or increases. Landauer even used the Second Law of Thermodynamics to predict the minimum amount of energy that must be released for each bit of information that is erased.

This idea remained theoretical for more than 40 years, but it was recently tested by experiment, and it seems that Landauer was correct.

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No, It’s Not a Tail!

human_embryo — A human embryo after about 7 weeks of development
(public domain image)

I have written a lot about the evolutionary myth of vestigial organs (here, here, here, here, and here), showing how several biological structures evolutionists once thought were vestigial are, in fact, quite necessary. The concept of vestigial organs is very popular among many evolutionists, but it usually boils down to ignorance. If evolutionists don’t know the use for a biological structure, they assume that it must be vestigial. As is often the case, however, further research generally shows that this evolutionary assumption is quite wrong, due to our ignorance of the structure being considered.

This concept is often employed when studying the development of embryos. Because of the fraudulent work of Ernst Haeckel, evolutionists have long promoted the myth that an embryo will produce vestiges of its evolutionary history as it develops. Once again, this is mostly the result of ignorance. Embryonic development is rather difficult to study, so we often observe things that we don’t understand. When these things superficially resemble something that supposedly developed in the evolutionary history of the organism that is being studied, it is often pointed to as some vestige of evolution.

For example, in Why Evolution is True, Dr. Jerry Coyne tries to make the case that the human embryo is covered in a fine coat of lanugo hair simply because it is a part of the evolutionary heritage of humans. He says that there is no reason for a human embryo to be covered with hair, but it happens because humans evolved from an ape-like ancestor that was covered in hair. The coat of hair is simply a leftover vestige from that part of the human evolutionary lineage. As I have already pointed out, this is utterly false. In fact, the fine coat of hair that human embryos have is incredibly important to their development, and the idea that it is a leftover vestige of evolution is just a result of ignorance when it comes to human embryonic development.

Well, in a Facebook group discussion I recently had, the conversation turned to the supposed “tail” that human embryos have early in their development. This is a popular myth, but it is utterly false, and I thought I would post this so that others would benefit from a modern scientific analysis of this important embryonic structure. As you can see in the photograph of a human embryo above, there is a structure (pointed out in the figure) that resembles a tail. The structure eventually goes away, but it is a rather striking part of the embryo while it is present. Evolutionists have long taught that this is a leftover vestige of when our ancestors had tails,¹ but we now know that such an idea is simply 100% false.

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Dawkins and His Poor Scholarship

augustine — St. Augustine as imagined by Sandro Botticelli in the late 15th century. (Public Domain Image)

I was speaking to a group of people in Portland, Indiana last night. As always, I took questions from the audience, and after the session, people came up and asked me more questions. In this individual question/answer session, one man said that he had read The God Delusion by Richard Dawkins, and he was wondering if I had any insight into something Dawkins claimed in the fourth chapter, “Why There Almost Certainly Is No God.” The man didn’t have the book with him, but he said that Dawkins claimed that St. Augustine (properly pronounced uh gus’ tin) encouraged people to avoid learning about the natural world, as gaps in our knowledge of the natural world glorify God. In other words, if we were to understand everything about the natural world, there would be nothing left to attribute to the Hand of God.

I read The God Delusion a few years ago, and I didn’t remember Dawkins making such a statement. I told the man that I am neither a philosopher nor a historian, but I can’t imagine St. Augustine saying any such thing. Augustine was very concerned about all manner of learning, and although he rarely wrote about anything related to science, I couldn’t imagine him saying that we shouldn’t learn about the natural world. I promised the man that I would look into it and write him back.

This morning, I looked around in Chapter 4 of my paperback edition of The God Delusion and found the portion to which the man was referring. In a subsection of the chapter entitled, “The Worship of Gaps,” Dawkins discusses Intelligent Design. He says that it basically promotes scientific laziness, because as soon as you attribute something to the Hand of God, there is nothing more you can learn about it. He then goes even further and says that an advocate of Intelligent Design would actually tell scientists to stop learning about something that is amazingly complex, so it can always be attributed to God. He then says:¹

St Augustine said it quite openly: ‘There is another form of temptation, even more fraught with danger. This is the disease of curiosity. It is this which drives us to try and discover the secrets of nature, those secrets which are beyond our understanding, which can avail us nothing and which man should not wish to learn.’ (quoted in Freeman 2002)

The reference he gives (Freeman 2002) is The Closing of the Western Mind by Charles Freeman. Like his discussion of Intelligent Design before it, this quote is 100% false.

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The Gorilla Genome Falsifies Another Evolution-Inspired Idea

There is a vast gulf between humans and the great apes. While we share some superficial similarities with them, they are dwarfed by significant differences. For example, most (but not all ¹) evolutionists think that our closest living relative is the chimpanzee, because our genomes are the most similar (72%-95% similar, depending on how you make the comparison). Nevertheless, there are distinct anatomical and behavioral differences between humans and chimpanzees. Indeed, nearly every bone in the chimpanzee body is individually recognizable as chimpanzee and not human simply by its shape and size. Humans and chimpanzees also have different postures, different means of moving around, and different methods of obtaining food. Of course, the biggest difference between chimpanzees and humans is that of intelligence. People have a level of intelligence not seen anywhere else in creation, and it is apparent through our ability to create amazing technologies, produce breathtaking works of art, develop philosophies, and communicate across the generations.

But wait a minute. Haven’t experiments shown that apes can communicate in a very sophisticated way? If you read too much of the popular press, you might think that’s true. However, consider the words of Dr. Jonathan Marks, Professor of Anthropology at UNC-Charlotte and an expert on communication in apes:²

For all the interest generated by the sign-language experiments with apes, three things are clear. First they do have the capacity to manipulate a symbol system given to them by humans, and to communicate with it. Second, unfortunately, they have nothing to say. And third, they do not use any such system in the wild…There is in fact very little overlap between chimpanzee and human communication. (emphasis mine)

So what is it that produces the remarkable difference between apes and humans when it comes to communication? Evolutionists thought they might have at least a partial answer to this question. If you look in detail at human genes and chimpanzee genes, you see some remarkable differences among those genes that deal with hearing. As a result, it has been widely suggested that the human lineage experienced “accelerated” evolution in its hearing genes, which in turn produced our ability to utilize language, which in turn produced our ability to communicate in a sophisticated way.

Not surprisingly, additional data have falsified this evolution-inspired notion.

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