Bioluminescence

Bioluminescent single-celled organisms make this wave glow.
Image from http://en.wikipedia.org/wiki/File:Bioluminescent_dinoflagellates.jpg

Bioluminescence is an amazing thing. Many living creatures use it to “light up” so they can communicate with others, more easily find food, or defend themselves against predators. In the picture above, for example, there are millions of single-celled organisms (called “dinoflagellates”) in the water. When they are disturbed, they use bioluminescence to glow. They are glowing in the picture because the wave is disturbing them. This is actually a defense mechanism. If the water is disturbed by an animal that eats them (such as a manta ray), the dinoflagellates glow, and the light might attract a predator that will eat (or scare away) the manta ray.

E. A. Widder wrote a review1 of bioluminescence in the May 7th issue of the Journal Science, and it is fascinating. As Widder points out, there are over 700 genera (the classification level above species) of organisms that use bioluminescence, and most of them (about 80%) live in the ocean. The mechanisms by which this process works are elegant and amazing, and they certainly defy any coherent evolutionary explanation.

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Imagine That – The Sun Is Important!

The dark spots on the sun's disk are sunspots.
from http://en.wikipedia.org/wiki/File:Sun_projection_
with_spotting-scope.jpg

It seems simple enough. The sun warms our planet. Thus, if one is wondering what is happening to the temperature of our planet, one should look for changes that are occurring in the sun. Sure, there are a lot of other things one must investigate as well, but the sun should be a major priority, right?

Well, not according to the Intergovernmental Panel On Climate Change (IPCC). In their 2007 report,1 which claims that “Warming of the climate system is unequivocal” and that there is a “very high confidence that the net effect of human activities since 1750 has been one of warming,” they state:

Solar irradiance contributions to global average radiative forcing are considerably smaller than the contribution of increases in greenhouse gases over the industrial period.

So the IPCC says that the huge ball of thermonuclear reactions upon which the earth depends isn’t nearly as important when it comes to climate change as the relatively recent 35% increase in atmospheric carbon dioxide.

Fortunately, not everyone thinks the IPCC is serious about science. As a result, some climate researchers are actually trying to figure out how important changes in the sun’s activity are when it comes to the overall temperature of the earth. Not surprisingly, current research is showing that the conclusions of the IPCC are wrong.

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Introns: Junk that Is Really Gold

Before the human genome was sequenced, it was thought that humans had well over 100,000 genes. This reasonable conclusion was based on the fact that that the human body is estimated to produce 120,000 – 140,000 different proteins. Since biology had determined that a gene tells a cell how to make a protein, it was assumed that 120,000 – 140,000 proteins would require 120,000 – 140,000 different genes.

As is often the case with science, however, the data turned out to be very surprising. When the human genome was initially sequenced, it was estimated to contain about 30,000 genes. Today, it is thought that the human genome contains 20,000–25,000 genes.1

So if a human cell requires a gene in order to make a protein, and if the human body produces as many as 140,000 different proteins, how can it do so with “only” 20,000–25,000 genes? A large part of the answer to that question has to do with an amazing process called alternative splicing.

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Entropy and Evolution, Part 2

In my previous post, I discussed the proper way to apply the Second Law of Thermodynamics to a simple process: the freezing of water in a bucket. Now I want to apply the Second Law of Thermodynamics to the process of evolution. This is a difficult thing to do, because currently, there is no accepted mechanism for the process of evolution. Evolution might occur according to the Neo-Darwinian Synthesis; it might occur via punctuated equilibrium; it might occur according to the evo-devo view; it might occur as a result of facilitated variation; it might occur by some as yet undiscovered mechanism; or it might occur as a result of a combination of all or some of these mechanisms.

Even though there is no agreed-upon mechanism for evolution, some general statements can be made about the supposed process, and that should be enough to allow us to roughly apply the Second Law of Thermodynamics to it. In general, evolution says that organisms increase in complexity over time. A single-celled organism, for example, eventually developed the ability (through some as yet unknown process) to cooperate with other cells, which eventually led to a multicelled organism. Clearly, a multicelled organism is more complex than a single-celled organism, so via that unknown process, “simpler” single-celled organisms gave rise to “more complex” multicelled organisms. These multicelled organisms began to develop (once again, through some as yet unknown process) more “advanced” features, so that eventually a large diversity of life formed.

The longer evolution had to work through its unknown process, the more complex living creatures became. Thus, while it took some time for the evolutionary process to create relatively “simple” multicelled creatures, it took more time for evolution to produce complex invertebrates, and it took more time for evolution to produce vertebrates. The more “advanced” the vertebrate, the longer it took for evolution to produce it.

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Entropy and Evolution, Part 1

I was reading Dr. Hunter’s blog yesterday, and he had a post about entropy and evolution. In that post, he cited an article that comes to the right conclusion on the issue, but for the wrong reason. In fact, I am surprised that it passed peer review, since it promotes a very bad misconception regarding the Second Law of Thermodynamics. Because both creationists and evolutionists do a very poor job of applying the Second Law of Thermodynamics to the concept of origins, I thought I would try to explain the proper way to interpret the Second Law of Thermodynamics. In the next post, I will then apply the Second Law to the concept of evolution.

Before I get started, however, let me tell you the overall conclusion. The Second Law of Thermodynamics DOES NOT forbid the process of evolution. I know there are many creationists out there who claim that it does, but they are simply wrong. In addition, I know there are a lot of evolutionists out there who claim that it doesn’t, but they do so for reasons that are often wrong. So let’s talk about the Second law of Thermodynamics and how to properly apply it to many situations, including the process of evolution.

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Blood Platelets…Not Just for Clotting!

From left to right: A red blood cell, a platelet, a white blood cell
Image in the pubic domain

A recent issue of Science has a very interesting article on blood platelets.1 As nearly any textbook that discusses human anatomy and physiology will tell you, there are three main types of blood cells: red blood cells, white blood cells, and platelets. As indicated by the scanning electron microscope image above, platelets are the smallest of the three.

In addition, almost any textbook that discusses human anatomy and physiology will tell you that each blood cell is principally involved in one area of your body’s maintenance. Red blood cells are responsible for carrying oxygen to the tissues, although to a certain extent, they also pick up carbon dioxide waste from the tissues. White blood cells are responsible for cleaning the tissues of debris and fighting off invaders. Blood platelets are involved in clotting the blood so that we don’t bleed to death from a small cut.

Interestingly enough, this article indicates that blood platelets do a lot more than what most textbooks tell you!

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That’s a Good Point!

Skull Reconstruction of Ardi
from http://commons.wikimedia.org/wiki/File:Ardi.jpg
In a recent issue of Science, there are a couple of short articles (called “Technical Comments”) about Ardipithecus ramidus. If you don’t remember this fossil, nicknamed “Ardi,” it was originally discussed in an October 2009 issue of the same journal.1 It was a collection of severely-crushed and poorly-fossilized remains that took more than 15 years to analyze. This analysis included a digital reconstruction of large portions of the skeleton. The skull pictured here, for example, is a digital reconstruction based on the crushed bones that were found.

At the time, Ardi was hailed as an amazingly important discovery, because the authors of the study claimed that the fossil’s features clearly showed it was a part of the supposed evolutionary lineage between an apelike ancestor and modern man. Indeed, Science called it the “breakthrough of the year” and said:

Even the earliest members of her species, Australopithecus afarensis, lived millions of years after the last common ancestor we shared with chimpanzees. The first act of the human story was still missing. Now comes Ardi, a 4.4-million-year-old female who shines bright new light on an obscure time in our past.2

The short articles I mentioned above disagree with some of the conclusions of the original studies on Ardi.

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Synthetic Life Shows the Impossibility of Abiogenesis

Dr Craig Venter made the news last week in a big way. As The Guardian put it:

Craig Venter and his team have built the genome of a bacterium from scratch and incorporated it into a cell to make what they call the world’s first synthetic life form.

It’s an amazing feat of biotechnology, and the process he and his team produced might result in some incredible applications down the road. What I find interesting about the process, however, is how well it illustrates that life simply cannot come about as the result of random chemical reactions guided by some sort of selection process. In other words, this stunning achievement really demonstrates the impossibility of abiogenesis.

The scientific report of Venter and his team’s accomplishment can be found on the website of the journal Science1. I finally got around to reading it, and it is truly fascinating. When you look at the details of how they created their “synthetic” life form, you find that Venter and his team relied on already-living systems not once, not twice, but a total of three times. Without relying on these already-living systems, they would not have been able to produce their “synthetic” cell.

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Baranomes

I want to discuss more about Dr. Peter Borger’s excellent posts at Creation Ministries International’s website, because I really think he is onto something. As anyone who is remotely familiar with young-earth creationism knows, God designed specific kinds of organisms. Those organisms were created with the ability to adapt to changing environments, so the organisms we see today are those that descended from the various created kinds. The scientific pursuit dedicated to determining exactly what kinds of organisms were made and how the organisms we see today are related to those created kinds of organisms is called baraminology. This word comes from the Hebrew words bara, which means “created,” and min, which means “kind.”

So how did God give these created kinds the ability to adapt to changing conditions? According to Dr. Borger, He gave them baranomes, which are:

pluripotent, undifferentiated genomes with an intrinsic ability for rapid adaptation and speciation. Baranomes are genomes that contained an excess of genes and variation-inducing genetic elements, and the law of natural preservation shaped individual populations of genomes according to what part of the baranome was used in a particular environment.

In other words, the genome of each created organism was full of many genes, some of which the organism didn’t even need. These “excess genes,” as well as changes produced by the built-in elements that promote genetic change, were then acted on by natural selection (which he calls “natural preservation”) to produce the various organisms that we see today. In the article I linked above, Dr. Borger produces some powerful evidence to support this idea.

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