Something I (and Most Scientists) Have Taught for Many Years is Probably Wrong!

One of the problems that science textbook authors face is the fact that science is constantly changing. As we learn more about the Creator’s handiwork, we find that the science we have taught as fact is actually incorrect. Sometimes, this is because the experiments upon which those facts are based were in error. Sometimes, it’s because our interpretations of those experiments were in error. Sometimes, it’s a result of making conclusions that go beyond what the experiments actually tell us. The practical upshot of all this is that some of the things you are reading in your science textbooks are wrong.

I recently found out that something I (and most other authors) have taught about DNA is probably wrong. Most people know that DNA is a double helix. As shown in the illustration above, those two helixes wind around each other, with the information-bearing units (called nucleotide bases) inside. In order for cells to use the information in DNA, those helixes have to be separated so that the sequence of the nucleotide bases can be read. That means the helixes need to be held together when DNA is not being used, and then they must be separated when it is time for the cell to read the DNA.

How does that happen? Well, according to most textbooks (including mine), it is because the nucleotide bases form hydrogen bonds with one another. Hydrogen bonds are weaker than true chemical bonds, but they can hold things together. As I say it in my textbook, Exploring Creation with Biology, 2nd Edition:

…the attraction between the atoms in hydrogen bonding is about 15% as strong as the attraction between two atoms that have a true chemical bond linking them. Thus, the hydrogen bonds in DNA are strong enough to keep the two chains together in a double helix, but they are significantly weaker than a true chemical bond. Since they are weaker than a true chemical bond, it is rather easy for the two helixes in DNA to unravel.

This sounds great, but a recent study indicates that it’s probably not true. If nothing else, it doesn’t tell the entire story.

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And Now For Something Completely Different

A while back, I posted a very creative test answer given to me by one of my former students. I want to post something else that she wrote. It’s not what you normally see on this blog, but I enjoyed it immensely. I hope you do, too.

A Tale of Two 19th Century Gentleman Scientists Living in the 21st Century in Six Short Scenes


By Eden Cook

~January 21, 20—~

It has been said, though by whom I cannot say, that every good story starts with a bad decision, and that is precisely what a certain Mr. Tobias Newton was thinking he had made in accepting the chairmanship of the S. O. O. S. S. Like so many societies of its kind, the Something-or-other Science Society had been founded with the best of intentions. It was to be a society for the local pursuers of all branches of scientific knowledge to aid one another by exchanging ideas, hypotheses, and data, and for some time this was what it had been. In past times Newton had brought those who were flagging in their scientific zeal to the society meetings and it almost never failed to invigorate their studies, but now it had fallen into disrepair due to that same lack of zeal on the part of its leading members. It could now be best described as a meeting of rather glum persons, mostly men and mostly chemists, who came together to complain of the weather, their health, and the lack of available Cesium. Newton had hoped to be able to revive the society that he had enjoyed so much in the past by accepting the position of chairman, but he found that instead of influencing the members for good, their persistent pessimism was wearing away his resolve.

Hence it was a rather dejected Mr. Tobias who arrived back at his extensive Edwardian abode. It was a house with that strange sort of charm peculiar to antiquated buildings which have not yet been allowed to fall into disrepair. But to one so accustomed to its premises as Newton, these finer qualities were for the moment swallowed by his many other preoccupations. Not the least of these other worries was the guests he had coming to stay with him. His cousin, Rutherford—a chemist—was coming to visit Newton later that week. In general Newton felt inept at entertaining company, but he was always at his ease around his cousin. The trouble was not (as it so often was) Rutherford, but his much younger lab assistant who simply went by Tertius. Newton knew next to nothing about the young scientist, but in all probability he would be a sorry addition to their customary twosome. But whether he really was or not, Newton needed to try to make his cousin’s assistant feel welcome, and we will leave him to attempt that very thing.

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This “Junk DNA” Confirms a Creationist Prediction!

How DNA is arranged in the nucleus of a cell when it’s not in the process of reproducing. (click for credit)

When a scientist refuses to see the design that is so obvious in nature, it can lead to all sorts of incorrect conclusions. Consider, for example, transposable elements in DNA. Often called “transposons,” they jump around in an organism’s genome. In other words, they are in different places in different cells of the same organism. Those who have their naturalist blinders on initially thought that they were useless – part of the “junk DNA” that represents all the evolutionary “flotsam and jetsam” that has accumulated over hundreds of millions of years. Dr. Leslie Pray, writing in Nature Education, puts it this way:

Transposable elements (TEs), also known as “jumping genes” or transposons, are sequences of DNA that move (or jump) from one location in the genome to another. Maize geneticist Barbara McClintock discovered TEs in the 1940s, and for decades thereafter, most scientists dismissed transposons as useless or “junk” DNA. McClintock, however, was among the first researchers to suggest that these mysterious mobile elements of the genome might play some kind of regulatory role, determining which genes are turned on and when this activation takes place.

Of course, we now know that these supposedly useless stretches of DNA have widespread functionality throughout the genome. However, a recent study demonstrated that one set of transposable elements (the HERV-H subfamily) has a particularly interesting function, which indicates that a creation scientist’s prediction I wrote about nine years ago has been confirmed.

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Cool Video of a Soft Dinosaur Cell

A dinosaur fossil (left) and a cell that came from a different part of the same fossil assemblage (right)
(Images copyright Mark Armitage. Click for source)

A couple of years ago, I wrote about the remarkable dinosaur research being done by microscopist Mark Armitage. The story discussed two scientific articles he wrote about finding soft dinosaur cells in a Triceratops fossil. Well, Armitage is continuing his research at the Dinosaur Soft Tissue Research Institute in the state of Washington. The pictures above represent some new results: soft bone cells from a Nanotyrannus fossil.

Now whether or not there is such a thing as a Nanotyrannus is actually a matter of debate. Some paleontologists think the fossils are really from a juvenile Tyrannosaurus. So it might be a different species, or it might just be a juvenile form of an already-known species. Regardless of which is correct, it is well accepted that these fossils have been found in Cretaceous rock that is supposed to be about 65 million years old. It’s hard to understand how any cellular material could have survived for that long without being fossilized. Nevertheless, the cells that Armitage has extracted from the fossil are soft, as shown in the video below.

Of course, it is always possible that the cell is not really from the dinosaur. However, that’s a bit hard to believe. It came from a bone, and it has all the visual characteristics of an osteocyte, which is a bone cell. I can’t think of any possible contaminant that has the size, shape, and filipodial extensions that you see in the video. Also, remember that Armitage previously extracted soft bone cells from a Triceratops fossil. Thus, if this is a contaminant, it must be common to two completely separate fossils (or somehow introduced by Armitage’s process, which once again, is hard to believe).

I think it is reasonable to conclude that Armitage is, indeed, isolating soft dinosaur bone cells. He plans to make a presentation at Lower Columbia College in Longview Washington, on October 5th 2019, at 7 pm. In that presentation, it looks like he will also discuss how the soft tissues from which his cells are isolated react to stains for DNA and RNA. I won’t be able to make it, but I sincerely hope that it is recorded and that Armitage eventually writes another article about his continuing research!

Large Study Indicates Genetics Has Little Influence on Sexual Orientation

I don’t normally write on topics like this, because studying human behavior is a tricky subject. There are all sorts of different explanations for a given behavioral characteristic in people, and trying to isolate a specific cause is difficult, to say the least. However, there has been a lot of news about the recent study that concluded there is “no gay gene,” and I have gotten several questions about it. As a result, I decided to read the study and share my thoughts.

First of all, it’s not surprising that there is no gay gene. In fact, researchers have said that for years. If there were a single gene that heavily influenced whether or not a person is homosexual, it would have been easy to find and discovered years ago. Also, even something as simple as the color of your eyes is governed by at least eight different genes. Thus, to think that something as complex as sexual behavior is governed by one gene is naive at best. So that specific result of the study is not even interesting, much less newsworthy. What makes the study newsworthy is its size, its scope, and the fact that its conclusions are very weak.

The study is massive in two ways. First, the main study looked at 477,522 individuals, but then it repeated the study using three smaller datasets that were composed of 15,142 individuals. Whenever you study people, the more people you have, the less uncertain your results will be. Thus, the sheer number of individuals in the study makes it important. Second, the study compared the entire genomes of the individuals. In other words, they looked at all the DNA found in the nucleus of the individuals’ cells. That’s a massive amount of data for a massive number of people!

What it tried to do is compare single nucleotide polymorphisms (SNPs) among the individuals to see if they could be correlated with sexual behavior. If you aren’t familiar with the term, SNPs are the most common variation between sets of human DNA. Genetic information comes in sequences of DNA building blocks called nucleotide bases. There are roughly three billion nucleotide bases in one strand of human DNA. An SNP is a change in one of those nucleotide bases.

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Excessive Screen Time Linked to Poor Psychological Health in Children and Adolescents

A child playing with an Apple iPad
(click for credit)
Screens are everywhere. It’s very hard to avoid them. However, many health organizations recommend that parents limit the amount of screen time children and adolescents have. First, the health effects of excessive screen time have been well documented. Children who watch TV, computer, phone, and tablet screens a lot don’t exercise much. That leads to some very poor health outcomes, such as obesity. Second, a recent study indicates that there are significant negative psychological effects associated with a lot of screen time.

Psychological research is difficult for many reasons. Whenever you deal with people, you have to try to control for all sorts of variables that affect each subject, and those variables are often significantly different in different subpopulations. In addition, some of outcome measures are subjective, at best. As a result, psychological studies often have conflicting results. However, this one seems to do a good job getting over those hurdles. It contains a lot of subjects (40,337) who were randomly selected, leading to an averaging-out of at least some of the variables. Also, it used the results of the National Survey of Children’s Health (NSCH), which was done in 2016. This survey was given to the people who know the subjects best: their caregivers. It also asks a lot of fairly objective mental health questions, such as whether or not the subject was ever diagnosed with anxiety or depression.

The survey also asked the subjects’ caregivers the following questions:

a) On an average weekday, about how much time does [child’s name] spend in front of a TV watching TV programs, videos, or playing video games?

b) On an average weekday, about how much time does [child’s name] spend with computers, cell phones, handheld video games, and other electronic devices, doing things other than schoolwork?

The researchers added the results of both questions to get the total amount of screen time the subject has each weekday. They then correlated that number to the mental-health-related questions on the survey. The results were rather alarming.

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Another High-Profile Defection from Darwinism

Yale computer science professor Dr. David Gelernter (click for source)

The High Priests of Science continue to assure us that there is no debate when it comes to the validity of evolution as an explanation for the history of life. As the National Academy of Sciences says:

…there is no debate within the scientific community over whether evolution occurred, and there is no evidence that evolution has not occurred. Some of the details of how evolution occurs are still being investigated. But scientists continue to debate only the particular mechanisms that result in evolution, not the overall accuracy of evolution as the explanation of life’s history.

The problem, of course, is that such dogmatic statements are not consistent with the data that is supposed to guide scientific inquiry. When people honestly evaluate such data, many see how wrong the High Priests of Science are. Nearly two years ago, for example, I wrote about a world-renowned paleontologist who put up a display in his museum showing how there was no controversy about evolution. The problem, of course, is that he had never investigated all the data. When he got up the courage to actually read books written by scientists who point out the many flaws in evolutionary thinking, he ended up being convinced by the data and defected away from Darwinism. This cost him his job, but at least his scientific integrity remained intact.

Now there is another addition to the list of high-profile academics who had the courage to investigate all the data. His name is Dr. David Gelernter, and he is a professor of computer science at Yale University. In May of this year, he wrote a very interesting article for The Claremont Institute. I encourage you to read the article in its entirety, but I cannot help but add a bit of “color commentary.”

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There Is Nothing Unusual About the Fires in the Amazon

Fire in the Stanislaus National Forest (not the Amazon region) in 2013 (click for credit)

I had another blog post planned for today, but I decided to put it off because over the weekend, I got three questions regarding the fires in the Amazon. People are concerned, mostly because of irresponsible articles like this one:

Brazil’s Amazon rainforest is burning at a record rate, research center says

It’s the classic example of a story that is technically true but absurdly misleading. Indeed, the National Institute for Space Research has never seen the number of forest fires that it is currently seeing in the Amazon. However, as the article notes, that research program started in 2013. So yes, over the past six years, this is the worst year yet. However, if you just broaden your scope a bit, you will see that there is nothing unusual about this year.

While the National Institute for Space Research has only been collecting data about forest fires since 2013, researchers at the Global Fire Emissions Database have been studying them since 2003. That’s almost three times as long. What do their data tell us? Well, all you have to do is go here. It gives you a handy graph that shows you the total count of fires in the Amazon region by year.

To make it stand out, I thickened the green line, which represents this year. As you can see, this year is pretty much dead center compared to the past 16 years. If you go to the link itself, you can put your cursor over the year listed under the graph, and you can see each year clearly. If you do that, you will see that 2003-2007 were all worse than this year, with 2005 setting the record. The data are actually more detailed than this. You can click on areas of the Amazon region on the left part of the website and see data for each region. If you click on “Amazonas,” for example, you will see that a few days in 2019 did set the record in that region.

It’s probably worth noting that many of these fires are caused by people…deliberately. Natural forest fires don’t happen in the Amazon region very often. Most of the fires are being set to clear land for agriculture, and most of them are not in the heavily-forested regions. Also, while you might be worried about deforestation in general, you needn’t be. The latest research indicates the earth has been getting greener since 1982.

UPDATE (08/27/2019): It does seem that there is something unusual happening in the Amazon right now. According to this source:

…the fires were at average levels through to mid August, and then there was a huge uptick.

Why was that? Seems that it started when the farmers in the state of Para declared a “‘dia do fogo,'” or “day of fire” on August 10th. They said they did this in order to show to Bolsonaro that they want to work and that the only way to clear pastures for them to work was with fire (report in Portuguese here), This was spectacularly “successful” and there was an immediate increase in fires which continued through the following weeks.

So there is unusual fire activity right now – more than the standard land-clearing fires for agricultural use. The added fires are the result of political protests.

Postmodernism Redefined

The cover of Dr. Lawler’s book
I am not a fan of postmodernism, at least as it is generally defined. Because of this, I have written a couple of posts (here and here) that portray it in a negative light. A frequent commenter on this blog, Jake, took issue with my negative portrayal and suggested that I read Postmodernism Rightly Understood by Dr. Peter Augustine Lawler.

Since I appreciate Jake’s excellent comments and have learned from him on more than one occasion, I wanted to read the book, but it took me a while to get to it. I finally did read it last week. It was an interesting book that discussed several important authors and their ideas. Some of the authors (like Walker Percy, Alexis de Tocqueville, and Allan Bloom) were familiar to me, but others weren’t. As a result, I learned a lot and was exposed to several new ideas. However, I think the book misses the mark.

Now, of course, I am practicing philosophy without a license, while Dr. Lawler is a trained philosopher with lots of experience. Thus, you can take this criticism for what it is worth. Nevertheless, I don’t think this book is a defense of postmodernism. It is more of a discussion of anti-modernism, and based on Lawler’s obvious admiration of Walker Percy (who definitely deserves admiration), it is more a defense of Thomism.

Of course, it’s easy to get lost in the language of philosophy, so let’s make sure we are all on the same page. When it comes to philosophy, modernism suggests that we should ignore traditions (both religious and social) and the inherent biases that come with them, and we should try to judge the world critically. The more unbiased we can be in our judgments, the better. If we do that, we will be able to control our own destiny.

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Forbes Censors Article About a Scientist Who Is Skeptical of Climate Hysteria

Dr. Nir Shaviv speaking in Australia
Dr. Nir J. Shaviv is an astrophysicist of some renown. He has over 100 scientific papers to his credit and is currently chairman of the Racah Institute of Physics at The Hebrew University of Jerusalem. I think it’s safe to say that Dr. Shaviv knows a thing or two about science and how it is done. One of his specialties is studying the effect that cosmic rays from the sun have on the earth’s climate. So just to make it clear. Dr. Nir Shaviv is a well-respected scientist who has published peer-reviewed research specifically about earth’s climate.

Does this mean we have to believe what Dr. Shaviv says when it comes to earth’s climate? Of course not. However, it does mean that he is a recognized expert in the field. Even when I disagree with experts, I still try to pay attention to what they say and the data they produce, because they know more than I do when it comes to the issue I am investigating. Thus, while I certainly don’t have to agree with the conclusions of any given expert, I do have to at least try to understand the data the expert has collected and why he or she thinks they point to a certain conclusion. If I don’t do that, I am no longer thinking scientifically. After all, the only way you can make a scientific conclusion is to consider all of the data. Ignoring data because I don’t agree with the source is not scientific; it is emotional.

Why am I bringing this up? Because last night, I was scrolling through a news feed and noticed a Forbes article entitled, “Global Warming? An Israeli Astrophysicist Provides Alternative View That Is Not Easy To Reject.” Obviously, that title was very interesting to me, so I clicked on the link. Unfortunately, what I found was a message that said:

After review, this post has been removed for failing to meet our editorial standards.

We are providing our readers the headline, author and first paragraphs in the interest of transparency.

We regret any inconvenience.

This seemed rather odd to me, so I decided to do some digging. What I found did not reflect well on Forbes.

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