Journal Tries to Bend the Knee to the Inquisition and Ends up Hurting the Cause!

click for credit

Three months ago, I blogged about an excellent article which used statistical methods to demonstrate that the fine-tuning seen in biology is even more extreme than what is seen in the properties of the universe as a whole. It was very much supportive of intelligent design and referenced many works from the intelligent design community. The article, which was published in a secular, peer-reviewed journal, finally caught the notice of the Inquisition. As a result, the High Priests of Science demanded penance from the editors of the journal. Their penance has come in the form of a disclaimer that appears in the journal. Here is what the disclaimer says:

The Journal of Theoretical Biology and its co-Chief Editors do not endorse in any way the ideology of nor reasoning behind the concept of intelligent design. Since the publication of the paper it has now become evident that the authors are connected to a creationist group (although their addresses are given on the paper as departments in bona fide universities). We were unaware of this fact while the paper was being reviewed. Moreover, the keywords “intelligent design” were added by the authors after the review process during the proofing stage and we were unaware of this action by the authors. We have removed these from the online version of this paper. We believe that intelligent design is not in any way a suitable topic for the Journal of Theoretical Biology.

I laughed out loud when I read this, because it shows how ignorant the journal editors are when it comes to the issue of origins. As a bonus, it also shows how wrong the High Priests of Science are about intelligent design and creationism.

First, the disclaimer makes it clear that the journal editors know nothing about intelligent design. Anyone with even a passing knowledge of intelligent design and the work that has been done in the area would immediately recognize that this paper strongly supports intelligent design. Yet the journal editors didn’t seem to notice at all! Thus, this very disclaimer is admitting that the journal editors are against something they know virtually nothing about!

Second, the disclaimer shows how strong the science in the article is. After all, the journal is predisposed to dislike any science that points to intelligent design. Nevertheless, this article points to intelligent design, even if the editors are too ignorant to realize that. Thus, the evidence it presents is so strong that even some scientists who are predisposed to be against its conclusions consider it worthy of publication!

Third, they note that while the authors “are connected to a creationist group,” their addresses are from “bona fide universities.” Why? Because creationists and intelligent design scientists are real scholars. “Bona fide universities” would not hire non-scholars! So even though the High Priests of science dogmatically say that those who support intelligent design aren’t real scholars, this very disclaimer admits that they are!

The disclaimer shows the untenable situation in which science finds itself today. The High Priests of Science proclaim from their exalted places of power that intelligent design and creationism aren’t science. Nevertheless, their actions demonstrate the exact opposite. This untenable situation cannot last, and when it finally does collapse entirely, science will be much better off.

Microscopic Analysis of Dinosaur Soft Tissue Casts More Doubt on Proposed Preservation Mechanism

The dark mass near the center is the cell body of a dinosaur bone cell. The various “arms” extending from the body are its filipodial extensions. (click for credit)
I have written a lot about soft tissue found in dinosaur fossils and other fossils that are supposed to be millions of years old (see here, here, here, here, here, and here, for example). Right now, the best work being done on this issue comes from the Dinosaur Soft Tissue Research Institute, which is run by microscopist and young-earth creationist Mark Armitage. Without the help of government grants, he and his colleagues have produced some truly incredible work. Their latest contribution was published in Microscopy Today, and it strengthens the case that these fossils cannot be millions of years old. As always, I encourage you to read the article in its entirety, but here is my “color commentary.”

First, the article shows more incredible, delicate structures that would not be expected to survive any preservation process that would protect them for millions of years. For the first time in the scientific literature, there are two excellent pictures of dinosaur vein valves (Figures 2 and 3), features that are so delicate they are hard to extract from animals that have just recently died. In another first, he shows a nerve from the same fossil (Figure 6). In that nerve, you can see the delicate Bands of Fontana, structures that are unique to nerves.

He also shows a bone cell from the same fossil (Figure 7). While bone cells from dinosaur fossils have been published in the scientific literature, this particular one is very important. Bone cells have characteristic structures called filipodial extensions that are remarkably thin (widths of less than 200 billionths of a meter). The bone cell shown in their study has a filipodial extension that is 24 millionths of a meter long. That doesn’t sound like much, but it is about 30% longer than any other dinosaur filipodial extension found in the literature. This is important, because its length is more than 100 times its width. Think about a structure with those dimensions made out of soft tissue. It would be ridiculously fragile, yet there it is in a dinosaur fossil!

Second, and more importantly, he shows that the current explanation evolutionists have for the preservation of soft tissue in dinosaur fossils doesn’t work. Dr. Mary Schweitzer was the first to give strong evidence for the existence of soft tissue in dinosaur fossils, but she is committed to an evolutionary view. As a result, she needs to find an explanation for how such tissue could survive for millions of years. Seven years ago, she published a study in which she hoped to show that iron from the blood of a dinosaur could produce certain reactions that would preserve the tissues. I wrote about her explanation at the time and how it didn’t seem to make sense based on what we knew. Later on, better chemists than I wrote a detailed analysis about how her explanation is inconsistent with the data.

This new paper demonstrates rather conclusively that Schweitzer’s explanation doesn’t work for the fossil being discussed. Armitage and his colleague (Jim Solliday) search the filipodial extensions of bone cells that are found right outside a canal that held a blood vessel. Since the cells are so close to what was a blood vessel, and since the filipodial extensions are so delicate, those iron-induced reactions should produce noticeable effects on the filipodial extensions. He shows that those effects are not present. Thus, it is unlikely that such reactions happened at all in the fossil.

Also, in her study, Schweitzer took great pains to prevent blood clotting so that iron from the blood could be distributed throughout the soft tissue she was trying to preserve. However, Armitage and Solliday present strong evidence for massive blood clotting in their fossil. This would prevent iron from being able to promote any tissue-preserving reactions. While their evidence is strong, however, it is not conclusive. Thus, as they suggest, more research needs to be done.

The Dinosaur Soft Tissue Research Institute is on the forefront of this issue in science, and they are doing it without the massive government grants available to organizations who are desperately trying to fit the data into an evolutionary framework. If you have the means, I suggest that you make a donation to keep science progressing in this area.

Another Peer-Reviewed Paper Favoring Intelligent Design

A figure from the paper being discussed, showing how a protein complex (left) can be converted to a graph (middle) to analyze how its parts relate to one another.

The more we learn about the universe, the more we see that it is a product of design. Indeed, for quite some time now, many scientists have recognized that the universe is finely-tuned for life. There are many parameters that govern how things happen in the universe, and they all have the characteristics of being just what they need to be for life to flourish. An electron, for example, is precisely as negative as the proton is positive, despite the fact that they are very, very different particles. If the charges were off by as little as one billionth of one percent, the resulting electrical imbalance in molecules would make even very small objects too unstable to form.1 The most obvious explanation for such fine-tuning is that the universe has been designed for life.

Now, of course, if you don’t want to believe that the universe is a product of design, you can offer any number of desperate alternatives. Perhaps we are just very fortunate. After all, if the universe weren’t designed for life, we wouldn’t be here to study it, so the very fact that we can discover these relationships tells us that the universe just happened to evolve into one that appears to be finely-tuned for life. You could also suggest that there are a ridiculously large number of universes out there. Most of them don’t have life, because they don’t have the proper parameters. However, if there are many, many universes, there’s a high likelihood that at least one will have all the right parameters, making it appear to be finely-tuned for life. You could also argue that there are actually a lot of combinations of parameters that might work for life; we just don’t know them. In that case, the universe’s apparent fine-tuning is an illusion.

While I think the scientific data clearly demonstrate that the universe is designed, I have always said that the most obvious case for design can be put forth by biology. Even the simplest life form on this planet is more complex and well-engineered than anything made by human technology, and most of the biological world makes our best inventions look positively crude by comparison. Well a reader (Victor Ferreira da Silva) sent me a paper in the secular, peer-reviewed literature that claims to have confirmed this fact.

Continue reading “Another Peer-Reviewed Paper Favoring Intelligent Design”

Did This Bird Go Extinct and Re-Evolve? I Doubt It.

A flightless Railbird on the Aldabra atoll in the Indian Ocean (click for credit)

Over the past few days, several people have sent me articles like this one, which makes a rather fantastic claim:

The Aldabra white-throated rail bird was declared extinct, a victim of rising sea levels almost 100,000 years ago.

However, the flightless brown bird has recently been spotted – leaving scientists scratching their heads as to how – and why – the species has come back to life.

What do you conclude from reading that? The article seems to be saying that no one had ever seen this bird before; it was only known from the fossil record. Now, however, living versions of it have been seen, and how they came back from extinction is a mystery. Unfortunately, like many “science news” stories, this one distorts the science to the point that it is deceptive and misleading.

The science that is being distorted comes from a study published last year. A responsible article that describes the study can be found here. While the study and the responsible article don’t distort the science, I do think the conclusion that they draw is not the only one consistent with the data.

Let’s start with the bird that is being discussed. It’s the Aldabra white-throated rail, whose scientific name is Dryolimnas [cuvieri] aldabranus. It lives on the Aldabra atoll in the Indian Ocean and is nearly identical to white-throated rails (Dryolimnas cuvieri) found in other parts of the world, like Madagascar. However, the ones on the Aldabra atoll cannot fly, while the others can. As a result, the flightless birds on the atoll are considered a subspecies of the version that can fly.

While we cannot say for sure, the generally-accepted origin story for the Aldabra white-throated rail is that normal white-throated rails landed on the atoll, and since there were no predators there, they stayed. Since they didn’t need to fly anymore, they evolved into flightless birds over several generations. This makes sense, because when a population of organisms doesn’t need a particular biological trait, mutations can degrade those traits without affecting survivability. In addition, DNA is so incredibly well-designed that over the course of generations, it can “turn off” genes that are no longer used in order to save energy. As a result, it makes sense that these flightless birds are descendants from birds that could originally fly.

Why do these articles discuss the birds being extinct at one point? Because the authors of the scientific study looked at the fossil record of the atoll. Using scientifically-irresponisble dating methods, they came to the conclusion that the atoll was completely underwater about 140,000 years ago. When they looked at fossils they interpreted to be older than 140,000 years, they found two bones that seem identical to the corresponding bones in the Aldabra white-throated rails that currently live on the atoll. Thus, they conclude that these flightless birds lived on the atoll before it went completely underwater.

Well, since the birds couldn’t fly, the authors assume that they all died when the atoll was underwater. However, in fossils that they interpret as being deposited after ocean levels decreased and the atoll was no longer underwater, they found another bone that looks similar to the corresponding bones in white-throated rails that can fly. However, it is heavier and more robust than what is found in those birds, but still lighter than what is found in the flightless Aldabra white-throated rails. In other words, it seems to be “in between” the bone of a normal white-throated rail and a flightless white-throated rail. To them, that gives “irrefutable evidence” (their words) that the Aldabra white-throated rails evolved twice: once before the atoll went underwater, and once after.

While their interpretation of the evidence makes sense and is consistent with all the known data, their case is certainly not “irrefutable.” First, you have to assume that they are interpreting the fossil record correctly. There is a lot of evidence to indicate the earth isn’t anywhere close to 140,000 years old, and if that evidence is correct, then their entire explanation is wrong. Also, even if the earth is as old as these scientists want to believe, the authors’ explanation is not the only one consistent with the data. We know that flightless animals can move from place to place on floating mats of vegetation. This is called “rafting,” and it is used by both evolutionists and creationists to explain the worldwide distribution of certain animals. If the atoll flooded like the authors think, the flightless birds could have survived by rafting. What about that one bone that is “in between” the two subspecies? There are natural variations in all bones. A “more robust” bone from a normal white-throated rail can be explained by natural variation within a population of normal white-throated rails.

The main reason I am writing about this is not to argue with the authors. It’s to point out the deceptiveness of articles like the one I quoted at the beginning of the post. As I have said many times before, do not believe the things you read in the popular press when it comes to science. Most “science journalists” are profoundly ill-equipped to understand science, and usually quite poor journalists as well.

Another Confirmed Creationist Prediction

This was one of the first depictions of Neanderthal man, based on the work of paleontologist Marcellin Boule.

In 1908 a nearly-complete fossil skeleton was found in La Chapelle-aux-Saints, France. Marcellin Boule, professor at the Museum of Natural History in France and director of the French Institute of Human Paleontology, analyzed the skeleton in detail, eventually publishing his findings in the scientific literature. Before his scientific publication, however, a weekly French newspaper (L’Illustration) published the drawing above, which was based on Boule’s work. The drawing was later published in the Illustrated London News. As you can see from the drawing, Neanderthal man was interpreted to be a sub-human creature that was probably one of the steps in the hypothetical evolutionary process that led from an ape-like creature to modern humans.

As time went on, more discoveries were made that indicated this view was far from correct. Artifacts were found indicating that Neanderthal man buried his dead, used fire, made art, etc. This somewhat elevated Neanderthals from sub-human to almost-human. When DNA analysis strongly suggested that Neanderthals and what some call “modern humans” interbred, it became increasingly clear that from a biological point of view, Neanderthals were, in fact, fully human. Nevertheless, most evolutionists still consider Neanderthals to have lower intelligence than modern humans.

Throughout this entire time, creationists have seen Neanderthals as human in every way, including their intelligence. As early as 1925, creationist Harry Rimmer wrote a pamphlet entitled “Monkeyshines: Facts, Fallacies, and Fables Concerning Evolution.” In it, he says that drawings like the one given above are incorrect. He goes on to state:

At any rate, these reconstructions of the Neanderthal man do not show him the way his skeleton really was. He also was a true man.

This has been a common theme throughout the young-earth creationist literature. Neanderthal man was truly human in every sense of the word. A recent paper confirms this long-standing creationist prediction, while at the same time falsifying the evolution-inspired idea that Neanderthal man was of low intelligence. The paper analyzed a cord that was found on a stone tool which was made by Neanderthals. While the cord was not part of the stone tool, it was stuck to the tool and was deposited either before or with it. The authors show that the cord was made of three strands twisted around each other, which indicates sophisticated intelligence. As they say, it

“…is the oldest direct evidence of fibre technology to date. Its production demonstrates a detailed ecological understanding of trees and how to transform them into entirely different functional substances. Fibre technology would have been an important part of everyday life and would have influenced seasonal scheduling and mobility. Furthermore, the production of cordage implies a cognitive understanding of numeracy and context sensitive operational memory. Given the ongoing revelations of Neanderthal art and technology, it is difficult to see how we can regard Neanderthals as anything other than the cognitive equals of modern humans.

As I have said before, it is an exciting time to be a young-earth creationist. The true test of a scientific theory is confirmation of its predictions, especially when those predictions are at odds with a competing theory. In this case (and many others), young-earth creationism is showing that it is a robust, successful scientific theory.

The Inquisition Is Furious About Brazil!

The logo of the Intelligent Design Research Institute at Mackensie University in Brazil. (click for source)

Bill Nye says and writes a lot of ignorant things (see here, here, here, here, and here, for example). While it is hard to choose the most ignorant statement he has ever made, this one has to be in the top five:

Denial of evolution is unique to the United States.

I have already shown how that statement is 100% false, and anyone who even casually investigates the issue would know that it is false. However, as the links above show, investigation is definitely not one of Nye’s strong suits! I was reminded of his incredibly ignorant statement when I read this article, from the journal Science.

Like Bill Nye, the author of the article doesn’t seem to understand how to investigate an issue. Nevertheless, the article has some interesting content. It seems that the federal government in Brazil has appointed Dr. Benedito Guimarães Aguiar Neto to head an agency called CAPES, which oversees Brazil’s graduate study programs. This is noteworthy, because Dr. Neto was instrumental in forming an Intelligent Design Research Center at Mackenzie Presbyterian University in Brazil. Of course, this infuriates the Scientific Inquisition, because Intelligent Design has been officially declared as heresy by the High Priests of Science. To have someone who believes in heresy positioned in a powerful educational office is unthinkable! As the article tells us, one Brazilian biologist has said:

It is completely illogical to place someone who has promoted actions contrary to scientific consensus in a position to manage programs that are essentially of scientific training.

Of course, that very statement is incredibly anti-science, because almost all of the great scientific advancements in history come from the very act of questioning the scientific consensus. I would think that every institution of higher education should have many high-level officials who challenge the scientific consensus.

As I said, the author of the article doesn’t seem to be able to investigate an issue, since he calls Dr. Neto a “creationist.” I realize that the term is very broad, but there is no indication that Dr. Neto is a creationist. In fact, all he has stated is that Intelligent Design should be introduced in Brazil’s basic educational curriculum. I suspect that he is an advocate of intelligent design for that reason, but that doesn’t make him a creationist. Dr. David Berlinski is an advocate of Intelligent Design, and he doesn’t even believe in God. However, if you are a lazy writer, it is easier to falsely label a person than it is to actually investigate what that person believes.

In any event, I can’t help but see this as a step in the right direction. The progress of science depends on questioning the scientific consensus. Whether or not it was intentional, Brazil’s government decided to appoint someone who is skeptical of the consensus in a position of influence when it comes to science education. Not only does this further demonstrate that Bill Nye’s statement is breathtakingly ignorant, but it also gives us more indication that the biological sciences are slowly emerging from the quagmire of NeoDarwinism and getting ready to truly advance.

More Incredible Dinosaur Soft Tissue Results

An axon from a nerve fiber, found in a triceratops fossil. (image taken from the video discussed below)

The Dinosaur Soft Tissue Research Institute is producing some incredible results. About two months ago, I discussed a video in which the institute’s founder, Mark Armitage, showed some of them. Recently, Armitage posted another video that shows even more results, and once again, they are amazing.

If you don’t have time to watch the entire video, let me summarize what I consider to be the two most amazing things shown. In my previous post, I told you that Armitage shows delicate vein valves that he extracted from soft tissue found in a triceratops fossil. It is amazing that he could get them, since they are so delicate that I end up destroying them when I try to get them from a dissection. More importantly, there is no possible way that such a vein valve could be from any source other than the dinosaur, since no organism that could possibly contaminate the fossil produces such structures. Thus, these vein valves are clearly original tissue from the dinosaur itself.

At 2:49 in this video, he shows not only the vein valve, but he shows that the wispy tissue which covers the valve when it is close is still 100% intact! How does he do that? He traps bacteria underneath the closed valve. The tissue is so thin that you can actually see the bacteria swimming around underneath it, trying to get out! The bacteria are obviously the result of contamination, but there is simply no way that the vein valve can be explained that way. So the video shows incredibly delicate dinosaur tissue (so delicate that you can see through it) that is still soft! That’s strong evidence that the fossil is not millions of years old!

Continue reading “More Incredible Dinosaur Soft Tissue Results”

A Bacterium That “Eats” Carbon Dioxide…and a Creationist Prediction

A false-color scanning electron microscope image of Escherichia coli. The different colors represent bacteria with different traits.

Escherichia coli (E. coli) are the workhorses of the bacterial world. They are found in every human being and most warm-blooded animals, but they are also found in laboratories all over the world. Because they are easy to care for, reproduce quickly, and have a genome that is reasonably well-understood, they are a popular subject of study among biologists. In addition, they end up producing a lot of chemicals that we need but are unable to produce ourselves. For example, insulin is a protein that all people need, but some people don’t make enough of it (or don’t respond well enough to it) to remain healthy. That leads to diabetes, and one treatment for diabetes is regular insulin injections.

While the insulin in pigs and cattle is close to what we find in people (and was used to treat diabetes for a long time), the best insulin for most diabetics is human insulin. Unfortunately, even with the best technology available, we aren’t good enough chemists to make insulin, but simple organisms like bacteria are. As a result, scientists have learned how to insert the human gene for insulin into a bacterium, which allows the bacterium to do the chemistry for us. As a result, much of the insulin used to treat diabetics today is human insulin produced by E. coli bacteria.

Unlike some species of bacteria, however, E. coli have to eat in order to get the energy and raw materials they need to do that chemistry. This ends up producing carbon dioxide as waste. To reduce the buildup of carbon dioxide in the atmosphere, then, it would be nice to produce chemicals like insulin from an organism that does not produce carbon dioxide in order to live. There are technical problems with that, however, so right now, diabetic insulin (and many other medically-related chemicals) adds to humanity’s “carbon footprint.” There are two ways to fix this: Either figure out how to use organisms that don’t have to eat (like organisms that make their own food through photosynthesis) or change E. coli so that it doesn’t have to eat.

In a recent study, scientists have been working on the second alternative and have experienced some success. As a byproduct, they have produced something that can be used to test creationism.

Continue reading “A Bacterium That “Eats” Carbon Dioxide…and a Creationist Prediction”

Incredibly Fragile Dinosaur Soft Tissue

Two images of the delicate, one-way valves from veins. They were found in dinosaur soft tissue!
(Image copied from the presentation embedded below)

Mark Armitage and James Solliday at the Dinosaur Soft Tissue Research Institute have been doing some amazing work. On October 5th, Mr. Armitage presented their findings at Lower Columbia College. Apparently, he has not yet received the video of that presentation, so he kindly posted a quick overview of the content. To me, it is astounding:

While everyone should watch all 15 minutes of the presentation, I want to highlight the things that I think are most important.

At 2:29, he shows two images that elicited an audible gasp from me when I first saw them. To understand just how incredible the images are, you need to know that there are one-way valves found in vertebrate veins. This is because the blood pressure in a vein is so low that blood can actually travel backwards. To prevent that, there are delicate, one-way valves throughout the veins. They open when the blood is flowing the correct way, and they close to prevent it flowing backwards. In the left-hand part of the image at the top of the post (copied from the presentation), you see a circle with what looks like a partially-opened tent flap. The circle is the base of the valve, and the “tent flap” is the delicate membrane that opens and closes. In that image, the valve is partly open. On the right-hand side, the valve is fully open.

This is incredible to me, because I have tried to dissect animals and extract these valves. I have never been able to. They are so delicate that I end up destroying them in the dissection process. Now, of course, I am not much of a biologist, and I am even less of an expert at dissection. Nevertheless, my experience with them indicates that they are absurdly delicate. Yet, here they are in a dinosaur fossil! Not only does this give evidence that the fossil is not millions of years old, but it also shows that these are definitely not structures that come from fungi or bacteria which recently invaded the fossil. Bacteria and fungi do not build structures with these delicate, one-way valves! He also presents other evidence that rules out bacterial and fungal contamination.

At 8:22, he shows red blood cells from a fossil that is supposed to be 400 million years old! The cells have the appropriate size and shape for red blood cells. Later on (12:05), he shows a blood vessel from a dinosaur fossil that has not even collapsed! It has an air bubble in it. When he does a stain test to see what is in the blood vessel, the test indicates that there is RNA in the blood vessel!

At 6:47, he shows what appears to be blood clotted in the tissue. He shows how it behaves just like you would expect blood to behave when exposed to polarized light, and he also shows that iron from the blood has not spread into the bone tissue. This is important, because Dr. Mary Schweitzer has proposed that iron might be preserving the soft tissue found in dinosaur bones. There has already been several arguments (see here and here) that seem to invalidate Dr. Schweitzer’s hypothesis, but this observation is the nail in the coffin. Iron can’t be preserving bone tissue if it doesn’t spread into the bone to begin with!

I have said this before and will say it again: It’s a wonderful time to be a young-earth creationist!

NOTE: A commentor made the great suggestion that I post a link if you want to support Mr. Armitage’s research. Here it is:

Donate to the Dinosaur Soft Tissue Research Institute.

This “Junk DNA” Confirms a Creationist Prediction!

How DNA is arranged in the nucleus of a cell when it’s not in the process of reproducing. (click for credit)

When a scientist refuses to see the design that is so obvious in nature, it can lead to all sorts of incorrect conclusions. Consider, for example, transposable elements in DNA. Often called “transposons,” they jump around in an organism’s genome. In other words, they are in different places in different cells of the same organism. Those who have their naturalist blinders on initially thought that they were useless – part of the “junk DNA” that represents all the evolutionary “flotsam and jetsam” that has accumulated over hundreds of millions of years. Dr. Leslie Pray, writing in Nature Education, puts it this way:

Transposable elements (TEs), also known as “jumping genes” or transposons, are sequences of DNA that move (or jump) from one location in the genome to another. Maize geneticist Barbara McClintock discovered TEs in the 1940s, and for decades thereafter, most scientists dismissed transposons as useless or “junk” DNA. McClintock, however, was among the first researchers to suggest that these mysterious mobile elements of the genome might play some kind of regulatory role, determining which genes are turned on and when this activation takes place.

Of course, we now know that these supposedly useless stretches of DNA have widespread functionality throughout the genome. However, a recent study demonstrated that one set of transposable elements (the HERV-H subfamily) has a particularly interesting function, which indicates that a creation scientist’s prediction I wrote about nine years ago has been confirmed.

Continue reading “This “Junk DNA” Confirms a Creationist Prediction!”